Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KFU74_RS07070 Genome accession   NZ_CP074007
Coordinates   1450512..1450988 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain PD4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1445512..1455988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU74_RS07030 (KFU74_06970) - 1446235..1447224 (-) 990 Protein_1374 hypothetical protein -
  KFU74_RS07040 (KFU74_06980) - 1447958..1448803 (-) 846 WP_063101552.1 DUF4942 domain-containing protein -
  KFU74_RS07045 (KFU74_06985) - 1448888..1449085 (-) 198 WP_088209831.1 DUF957 domain-containing protein -
  KFU74_RS07050 (KFU74_06990) - 1449113..1449310 (-) 198 Protein_1377 DUF5983 family protein -
  KFU74_RS07055 (KFU74_06995) cbtA 1449307..1449684 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  KFU74_RS07060 (KFU74_07000) - 1449774..1450142 (-) 369 WP_053287563.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KFU74_RS07065 (KFU74_07005) - 1450222..1450443 (-) 222 WP_000692309.1 DUF987 domain-containing protein -
  KFU74_RS07070 (KFU74_07010) radC 1450512..1450988 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  KFU74_RS07075 (KFU74_07015) - 1451003..1451488 (-) 486 WP_000214317.1 antirestriction protein -
  KFU74_RS07080 (KFU74_07020) - 1451579..1452397 (-) 819 WP_053292454.1 DUF932 domain-containing protein -
  KFU74_RS07085 (KFU74_07025) - 1452724..1453134 (-) 411 Protein_1384 autotransporter outer membrane beta-barrel domain-containing protein -
  KFU74_RS07090 (KFU74_07030) - 1453303..1454175 (-) 873 WP_053292456.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=489806 KFU74_RS07070 WP_001186747.1 1450512..1450988(-) (radC) [Escherichia coli strain PD4]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=489806 KFU74_RS07070 WP_001186747.1 1450512..1450988(-) (radC) [Escherichia coli strain PD4]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392