Detailed information NTG0489802

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU74_RS06605
• Genome accession: NZ_CP074007
• Coordinates: 1364695..1365687 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PD4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1359695..1370687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU74_RS06575 (KFU74_06515)	ispD	1359756..1360466 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU74_RS06580 (KFU74_06520)	ispF	1360466..1360945 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU74_RS06585 (KFU74_06525)	truD	1360942..1361991 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU74_RS06590 (KFU74_06530)	surE	1361972..1362733 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU74_RS06595 (KFU74_06535)	pcm	1362727..1363353 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU74_RS06600 (KFU74_06540)	nlpD	1363538..1364632 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU74_RS06605 (KFU74_06545)	rpoS	1364695..1365687 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU74_RS06610 (KFU74_06550)	ygbN	1365781..1367145 (-)	1365	WP_191007525.1	GntP family transporter	-
KFU74_RS06615 (KFU74_06555)	ygbM	1367234..1368010 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KFU74_RS06620 (KFU74_06560)	ygbL	1368015..1368653 (-)	639	WP_113073890.1	aldolase	-
KFU74_RS06625 (KFU74_06565)	otnK	1368650..1369912 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=489802 KFU74_RS06605 WP_000081550.1 1364695..1365687(+) (rpoS) [Escherichia coli strain PD4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=489802 KFU74_RS06605 WP_000081550.1 1364695..1365687(+) (rpoS) [Escherichia coli strain PD4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715