Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU69_RS08880 Genome accession   NZ_CP074005
Coordinates   1882258..1883685 (-) Length   475 a.a.
NCBI ID   WP_072132999.1    Uniprot ID   -
Organism   Escherichia coli strain PI12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1877258..1888685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU69_RS08850 (KFU69_08795) yeeZ 1877313..1878137 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  KFU69_RS08855 (KFU69_08800) yeeY 1878183..1879112 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU69_RS08860 (KFU69_08805) yoeI 1879327..1879389 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU69_RS08865 (KFU69_08810) plaP 1879379..1880737 (+) 1359 WP_064529416.1 putrescine/proton symporter PlaP -
  KFU69_RS08870 (KFU69_08815) tsuA 1880916..1881974 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU69_RS08875 (KFU69_08820) tsuB 1881988..1882215 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU69_RS08880 (KFU69_08825) sbcB 1882258..1883685 (-) 1428 WP_072132999.1 exodeoxyribonuclease I Machinery gene
  KFU69_RS08885 (KFU69_08830) dacD 1883894..1885060 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU69_RS08890 (KFU69_08835) sbmC 1885179..1885652 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KFU69_RS08895 (KFU69_08840) yeeA 1885850..1886908 (+) 1059 WP_001200891.1 FUSC family protein -
  KFU69_RS08900 (KFU69_08845) tmaR 1887080..1887409 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU69_RS08905 (KFU69_08850) - 1887510..1887692 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KFU69_RS08910 (KFU69_08855) - 1887764..1887892 (+) 129 Protein_1759 transposase domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4720

>NTDB_id=489725 KFU69_RS08880 WP_072132999.1 1882258..1883685(-) (sbcB) [Escherichia coli strain PI12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489725 KFU69_RS08880 WP_072132999.1 1882258..1883685(-) (sbcB) [Escherichia coli strain PI12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581