Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KFU69_RS00355 Genome accession   NZ_CP074005
Coordinates   77943..78611 (+) Length   222 a.a.
NCBI ID   WP_161992037.1    Uniprot ID   -
Organism   Escherichia coli strain PI12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72943..83611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU69_RS00325 (KFU69_00320) yicC 72962..73825 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  KFU69_RS00330 (KFU69_00325) rph 73952..74668 (+) 717 WP_001247089.1 ribonuclease PH -
  KFU69_RS00335 (KFU69_00330) pyrE 74734..75375 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  KFU69_RS00340 (KFU69_00335) slmA 75412..76008 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  KFU69_RS00345 (KFU69_00340) dut 76115..76573 (-) 459 WP_000976070.1 dUTP diphosphatase -
  KFU69_RS00350 (KFU69_00345) coaBC 76551..77771 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  KFU69_RS00355 (KFU69_00350) radC 77943..78611 (+) 669 WP_161992037.1 DNA repair protein RadC Machinery gene
  KFU69_RS00360 (KFU69_00355) rpmB 78828..79064 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  KFU69_RS00365 (KFU69_00360) rpmG 79085..79252 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  KFU69_RS00370 (KFU69_00365) mutM 79350..80159 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  KFU69_RS00375 (KFU69_00370) coaD 80198..80677 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  KFU69_RS00380 (KFU69_00375) waaA 80685..81962 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  KFU69_RS00385 (KFU69_00380) rfaQ 82375..83433 (+) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25212.26 Da        Isoelectric Point: 7.9748

>NTDB_id=489694 KFU69_RS00355 WP_161992037.1 77943..78611(+) (radC) [Escherichia coli strain PI12]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRAITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFIDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=489694 KFU69_RS00355 WP_161992037.1 77943..78611(+) (radC) [Escherichia coli strain PI12]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
CTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCATCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATAGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491