Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KFU80_RS19520 Genome accession   NZ_CP074001
Coordinates   3995509..3995985 (-) Length   158 a.a.
NCBI ID   WP_001186746.1    Uniprot ID   -
Organism   Escherichia coli strain PM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3990509..4000985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU80_RS19475 (KFU80_19305) nanS 3990613..3991593 (+) 981 WP_001295601.1 sialate O-acetylesterase -
  KFU80_RS19480 (KFU80_19310) - 3991601..3992251 (-) 651 WP_001037966.1 HNH endonuclease -
  KFU80_RS19485 (KFU80_19315) - 3992388..3992537 (+) 150 Protein_3830 restriction endonuclease -
  KFU80_RS23605 - 3993195..3993323 (-) 129 Protein_3831 transcriptional regulator -
  KFU80_RS19490 (KFU80_19320) - 3993299..3993448 (-) 150 Protein_3832 restriction endonuclease subunit M -
  KFU80_RS19495 (KFU80_19325) - 3993533..3993730 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  KFU80_RS19500 (KFU80_19330) - 3993742..3994230 (-) 489 WP_196010886.1 DUF5983 family protein -
  KFU80_RS19505 (KFU80_19335) - 3994227..3994604 (-) 378 WP_126697185.1 TA system toxin CbtA family protein -
  KFU80_RS19510 (KFU80_19340) - 3994694..3995062 (-) 369 WP_021542768.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KFU80_RS19515 (KFU80_19345) - 3995225..3995446 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  KFU80_RS19520 (KFU80_19350) radC 3995509..3995985 (-) 477 WP_001186746.1 RadC family protein Machinery gene
  KFU80_RS19525 (KFU80_19355) - 3996001..3996486 (-) 486 WP_000849588.1 antirestriction protein -
  KFU80_RS19530 (KFU80_19360) - 3996541..3997359 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  KFU80_RS19535 (KFU80_19365) - 3997459..3997692 (-) 234 WP_001119729.1 DUF905 family protein -
  KFU80_RS19540 (KFU80_19370) - 3997771..3998226 (-) 456 WP_000581504.1 IrmA family protein -
  KFU80_RS19545 (KFU80_19375) - 3998302..4000818 (-) 2517 WP_257187705.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17669.25 Da        Isoelectric Point: 6.9859

>NTDB_id=489673 KFU80_RS19520 WP_001186746.1 3995509..3995985(-) (radC) [Escherichia coli strain PM4]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=489673 KFU80_RS19520 WP_001186746.1 3995509..3995985(-) (radC) [Escherichia coli strain PM4]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386