Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU80_RS08555 Genome accession   NZ_CP074001
Coordinates   1775713..1777140 (-) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli strain PM4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1770713..1782140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU80_RS08525 (KFU80_08450) yeeZ 1770768..1771592 (+) 825 WP_000754756.1 SDR family oxidoreductase -
  KFU80_RS08530 (KFU80_08455) yeeY 1771638..1772567 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU80_RS08535 (KFU80_08460) yoeI 1772782..1772844 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU80_RS08540 (KFU80_08465) plaP 1772834..1774192 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU80_RS08545 (KFU80_08470) tsuA 1774371..1775429 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU80_RS08550 (KFU80_08475) tsuB 1775443..1775670 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU80_RS08555 (KFU80_08480) sbcB 1775713..1777140 (-) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  KFU80_RS08560 (KFU80_08485) dacD 1777349..1778515 (+) 1167 WP_001403689.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU80_RS08565 (KFU80_08490) sbmC 1778634..1779107 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KFU80_RS08570 (KFU80_08495) yeeA 1779305..1780363 (+) 1059 WP_001200905.1 FUSC family protein -
  KFU80_RS08575 (KFU80_08500) tmaR 1780535..1780864 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU80_RS08580 (KFU80_08505) - 1780965..1781147 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KFU80_RS08585 (KFU80_08510) - 1781210..1781347 (+) 138 Protein_1685 transposase domain-containing protein -
  KFU80_RS08590 (KFU80_08515) - 1781636..1781728 (-) 93 Protein_1686 DUF957 domain-containing protein -
  KFU80_RS08595 (KFU80_08520) yeeW 1781762..1781956 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=489644 KFU80_RS08555 WP_000980568.1 1775713..1777140(-) (sbcB) [Escherichia coli strain PM4]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489644 KFU80_RS08555 WP_000980568.1 1775713..1777140(-) (sbcB) [Escherichia coli strain PM4]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583