Detailed information NTG0489631

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU80_RS04845
• Genome accession: NZ_CP074001
• Coordinates: 994302..995294 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PM4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 989302..1000294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU80_RS04815 (KFU80_04760)	ispD	989363..990073 (+)	711	WP_097740602.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU80_RS04820 (KFU80_04765)	ispF	990073..990552 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU80_RS04825 (KFU80_04770)	truD	990549..991598 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
KFU80_RS04830 (KFU80_04775)	surE	991579..992340 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU80_RS04835 (KFU80_04780)	pcm	992334..992960 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU80_RS04840 (KFU80_04785)	nlpD	993145..994239 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU80_RS04845 (KFU80_04790)	rpoS	994302..995294 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU80_RS04850 (KFU80_04795)	ygbN	995388..996752 (-)	1365	WP_000104441.1	GntP family transporter	-
KFU80_RS04855 (KFU80_04800)	ygbM	996841..997617 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KFU80_RS04860 (KFU80_04805)	ygbL	997622..998260 (-)	639	WP_001278994.1	aldolase	-
KFU80_RS04865 (KFU80_04810)	otnK	998257..999519 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=489631 KFU80_RS04845 WP_000081550.1 994302..995294(+) (rpoS) [Escherichia coli strain PM4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=489631 KFU80_RS04845 WP_000081550.1 994302..995294(+) (rpoS) [Escherichia coli strain PM4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715