Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU86_RS05715 Genome accession   NZ_CP073996
Coordinates   1148497..1149924 (+) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain PM7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1143497..1154924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU86_RS05685 (KFU86_05655) pduU 1143874..1144224 (+) 351 WP_123008162.1 propanediol utilization microcompartment protein PduU -
  KFU86_RS05690 (KFU86_05660) - 1144229..1144672 (+) 444 WP_001189430.1 EutP/PduV family microcompartment system protein -
  KFU86_RS05695 (KFU86_05665) tmaR 1144773..1145102 (-) 330 WP_000450409.1 DUF496 family protein -
  KFU86_RS05700 (KFU86_05670) yeeA 1145274..1146332 (-) 1059 WP_001200891.1 FUSC family protein -
  KFU86_RS05705 (KFU86_05675) sbmC 1146530..1147003 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KFU86_RS05710 (KFU86_05680) dacD 1147122..1148288 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU86_RS05715 (KFU86_05685) sbcB 1148497..1149924 (+) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  KFU86_RS05720 (KFU86_05690) tsuB 1149967..1150194 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU86_RS05725 (KFU86_05695) tsuA 1150208..1151266 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU86_RS05730 (KFU86_05700) plaP 1151445..1152803 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU86_RS05735 (KFU86_05705) yoeI 1152793..1152855 (-) 63 WP_010723108.1 membrane protein YoeI -
  KFU86_RS05740 (KFU86_05710) yeeY 1153070..1153999 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU86_RS05745 (KFU86_05715) yeeZ 1154045..1154869 (-) 825 WP_000754752.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=489546 KFU86_RS05715 WP_000980608.1 1148497..1149924(+) (sbcB) [Escherichia coli strain PM7]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489546 KFU86_RS05715 WP_000980608.1 1148497..1149924(+) (sbcB) [Escherichia coli strain PM7]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCACAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581