Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IF751_RS04750 Genome accession   NZ_CP062407
Coordinates   994881..995450 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_181     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 989881..1000450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF751_RS04710 (IF751_04685) - 990356..990964 (-) 609 WP_000020299.1 class I SAM-dependent methyltransferase -
  IF751_RS04715 (IF751_04690) rplL 991139..991507 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IF751_RS04720 (IF751_04695) rplJ 991550..992050 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  IF751_RS04725 (IF751_04700) rplA 992322..993014 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  IF751_RS04730 (IF751_04705) rplK 993222..993644 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  IF751_RS04735 (IF751_04710) nusG 993824..994372 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IF751_RS04740 (IF751_04715) secE 994385..994567 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  IF751_RS04745 (IF751_04720) rpmG 994623..994766 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  IF751_RS04750 (IF751_04725) sigH 994881..995450 (-) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  IF751_RS04755 (IF751_04730) - 995531..996055 (-) 525 WP_000664738.1 NYN domain-containing protein -
  IF751_RS04760 (IF751_04735) rlmB 996055..996801 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IF751_RS04765 (IF751_04740) - 996809..997213 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IF751_RS04770 (IF751_04745) cysS 997206..998606 (-) 1401 WP_020977020.1 cysteine--tRNA ligase -
  IF751_RS04775 (IF751_04750) cysE 998590..999237 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=489518 IF751_RS04750 WP_000872876.1 994881..995450(-) (sigH) [Staphylococcus aureus strain NAS_NP_181]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=489518 IF751_RS04750 WP_000872876.1 994881..995450(-) (sigH) [Staphylococcus aureus strain NAS_NP_181]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984