Detailed information NTG0489472

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU72_RS05205
• Genome accession: NZ_CP073994
• Coordinates: 1073287..1074279 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1068287..1079279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU72_RS05175 (KFU72_05150)	ispD	1068348..1069058 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU72_RS05180 (KFU72_05155)	ispF	1069058..1069537 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU72_RS05185 (KFU72_05160)	truD	1069534..1070583 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU72_RS05190 (KFU72_05165)	surE	1070564..1071325 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
KFU72_RS05195 (KFU72_05170)	pcm	1071319..1071945 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU72_RS05200 (KFU72_05175)	nlpD	1072130..1073224 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KFU72_RS05205 (KFU72_05180)	rpoS	1073287..1074279 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU72_RS05210 (KFU72_05185)	ygbN	1074373..1075737 (-)	1365	WP_000104456.1	GntP family transporter	-
KFU72_RS05215 (KFU72_05190)	ygbM	1075826..1076602 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KFU72_RS05220 (KFU72_05195)	ygbL	1076607..1077245 (-)	639	WP_001278994.1	aldolase	-
KFU72_RS05225 (KFU72_05200)	otnK	1077242..1078504 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=489472 KFU72_RS05205 WP_000081550.1 1073287..1074279(+) (rpoS) [Escherichia coli strain MB1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=489472 KFU72_RS05205 WP_000081550.1 1073287..1074279(+) (rpoS) [Escherichia coli strain MB1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715