Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF754_RS09155 Genome accession   NZ_CP062405
Coordinates   1795722..1796438 (+) Length   238 a.a.
NCBI ID   WP_001560660.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_209     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790722..1801438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF754_RS09125 (IF754_09080) - 1790934..1791560 (+) 627 WP_000522388.1 nitroreductase family protein -
  IF754_RS09130 (IF754_09085) - 1791921..1792706 (+) 786 WP_000867948.1 carbon-nitrogen family hydrolase -
  IF754_RS09135 hld 1793309..1793389 (-) 81 WP_000046022.1 delta-hemolysin -
  IF754_RS09140 (IF754_09095) - 1793679..1794242 (+) 564 WP_001105709.1 accessory gene regulator AgrB -
  IF754_RS09145 (IF754_09100) - 1794246..1794386 (+) 141 WP_000735197.1 cyclic lactone autoinducer peptide -
  IF754_RS09150 (IF754_09105) - 1794411..1795703 (+) 1293 WP_000387814.1 GHKL domain-containing protein -
  IF754_RS09155 (IF754_09110) agrA 1795722..1796438 (+) 717 WP_001560660.1 LytTR family DNA-binding domain-containing protein Regulator
  IF754_RS09160 (IF754_09115) - 1796812..1797771 (-) 960 WP_001253292.1 carbohydrate kinase -
  IF754_RS09165 (IF754_09120) - 1797768..1799252 (-) 1485 WP_001791588.1 sucrose-6-phosphate hydrolase -
  IF754_RS09170 (IF754_09125) - 1799401..1800351 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27887.87 Da        Isoelectric Point: 6.0927

>NTDB_id=489457 IF754_RS09155 WP_001560660.1 1795722..1796438(+) (agrA) [Staphylococcus aureus strain NAS_NP_209]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDII
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=489457 IF754_RS09155 WP_001560660.1 1795722..1796438(+) (agrA) [Staphylococcus aureus strain NAS_NP_209]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATT
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996