Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   IF757_RS06355 Genome accession   NZ_CP062404
Coordinates   1293788..1294087 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain NAS_NP_229     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288788..1299087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF757_RS06330 (IF757_06300) gcvPA 1290000..1291346 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF757_RS06335 (IF757_06305) gcvT 1291366..1292457 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  IF757_RS06340 (IF757_06310) - 1292616..1293140 (-) 525 WP_001015125.1 shikimate kinase -
  IF757_RS06345 (IF757_06315) - 1293130..1293276 (-) 147 WP_001789879.1 hypothetical protein -
  IF757_RS06350 (IF757_06320) comGF 1293373..1293870 (-) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF757_RS06355 (IF757_06325) comGE 1293788..1294087 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF757_RS06360 (IF757_06330) comGD 1294074..1294520 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF757_RS06365 (IF757_06335) comGC 1294498..1294809 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  IF757_RS06370 (IF757_06340) comGB 1294823..1295893 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF757_RS06375 (IF757_06345) comGA 1295865..1296839 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF757_RS06380 (IF757_06350) - 1296891..1297514 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF757_RS06385 (IF757_06355) - 1297511..1297840 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF757_RS06390 (IF757_06360) - 1297840..1298826 (-) 987 WP_000161314.1 ROK family glucokinase -
  IF757_RS06395 (IF757_06365) - 1298823..1299026 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=489399 IF757_RS06355 WP_000844413.1 1293788..1294087(-) (comGE) [Staphylococcus aureus strain NAS_NP_229]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=489399 IF757_RS06355 WP_000844413.1 1293788..1294087(-) (comGE) [Staphylococcus aureus strain NAS_NP_229]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTTATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAATATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99