Detailed information NTG0489268

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU84_RS12785
• Genome accession: NZ_CP073981
• Coordinates: 2662628..2663620 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2657628..2668620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU84_RS12755 (KFU84_12645)	ispD	2657689..2658399 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU84_RS12760 (KFU84_12650)	ispF	2658399..2658878 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU84_RS12765 (KFU84_12655)	truD	2658875..2659924 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU84_RS12770 (KFU84_12660)	surE	2659905..2660666 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU84_RS12775 (KFU84_12665)	pcm	2660660..2661286 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU84_RS12780 (KFU84_12670)	nlpD	2661471..2662565 (+)	1095	WP_306569015.1	murein hydrolase activator NlpD	-
KFU84_RS12785 (KFU84_12675)	rpoS	2662628..2663620 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU84_RS12790 (KFU84_12680)	ygbN	2663714..2665078 (-)	1365	WP_000104460.1	GntP family transporter	-
KFU84_RS12795 (KFU84_12685)	ygbM	2665167..2665943 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
KFU84_RS12800 (KFU84_12690)	ygbL	2665948..2666586 (-)	639	WP_001278994.1	aldolase	-
KFU84_RS12805 (KFU84_12695)	otnK	2666583..2667845 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=489268 KFU84_RS12785 WP_000081550.1 2662628..2663620(+) (rpoS) [Escherichia coli strain MB19]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=489268 KFU84_RS12785 WP_000081550.1 2662628..2663620(+) (rpoS) [Escherichia coli strain MB19]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715