Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF772_RS13325 Genome accession   NZ_CP062400
Coordinates   2691698..2692414 (-) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain NAS_OP_107     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2686698..2697414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF772_RS13305 (IF772_13200) - 2687790..2688740 (+) 951 WP_000790318.1 LacI family DNA-binding transcriptional regulator -
  IF772_RS13310 (IF772_13205) - 2688889..2690373 (+) 1485 WP_000141426.1 sucrose-6-phosphate hydrolase -
  IF772_RS13315 (IF772_13210) - 2690370..2691329 (+) 960 WP_001253302.1 carbohydrate kinase -
  IF772_RS13320 (IF772_13215) - 2691517..2691626 (-) 110 Protein_2585 hypothetical protein -
  IF772_RS13325 (IF772_13220) agrA 2691698..2692414 (-) 717 WP_000688498.1 LytTR family DNA-binding domain-containing protein Regulator
  IF772_RS13330 (IF772_13225) - 2692433..2693725 (-) 1293 WP_001657119.1 GHKL domain-containing protein -
  IF772_RS13335 (IF772_13230) - 2693750..2693890 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  IF772_RS13340 (IF772_13235) agrB 2693887..2694456 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  IF772_RS13760 (IF772_13240) - 2694692..2694826 (+) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  IF772_RS13350 (IF772_13245) - 2695422..2696207 (-) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  IF772_RS13355 (IF772_13250) - 2696568..2697194 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=489257 IF772_RS13325 WP_000688498.1 2691698..2692414(-) (agrA) [Staphylococcus aureus strain NAS_OP_107]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=489257 IF772_RS13325 WP_000688498.1 2691698..2692414(-) (agrA) [Staphylococcus aureus strain NAS_OP_107]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996