Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU64_RS08280 Genome accession   NZ_CP073976
Coordinates   1770854..1772281 (-) Length   475 a.a.
NCBI ID   WP_001578569.1    Uniprot ID   -
Organism   Escherichia coli strain MB20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765854..1777281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU64_RS08250 (KFU64_08190) yeeZ 1765909..1766733 (+) 825 WP_096924265.1 SDR family oxidoreductase -
  KFU64_RS08255 (KFU64_08195) yeeY 1766779..1767708 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU64_RS08260 (KFU64_08200) yoeI 1767923..1767985 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU64_RS08265 (KFU64_08205) plaP 1767975..1769333 (+) 1359 WP_130560307.1 putrescine/proton symporter PlaP -
  KFU64_RS08270 (KFU64_08210) tsuA 1769512..1770570 (+) 1059 WP_001759318.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU64_RS08275 (KFU64_08215) tsuB 1770584..1770811 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU64_RS08280 (KFU64_08220) sbcB 1770854..1772281 (-) 1428 WP_001578569.1 exodeoxyribonuclease I Machinery gene
  KFU64_RS08285 (KFU64_08225) dacD 1772490..1773656 (+) 1167 WP_032200074.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU64_RS08290 (KFU64_08230) sbmC 1773775..1774248 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  KFU64_RS08295 (KFU64_08235) yeeA 1774447..1775505 (+) 1059 WP_001200891.1 FUSC family protein -
  KFU64_RS08300 (KFU64_08240) tmaR 1775677..1776006 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU64_RS08305 (KFU64_08245) - 1776107..1776472 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54546.82 Da        Isoelectric Point: 5.3476

>NTDB_id=489171 KFU64_RS08280 WP_001578569.1 1770854..1772281(-) (sbcB) [Escherichia coli strain MB20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDREKMALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489171 KFU64_RS08280 WP_001578569.1 1770854..1772281(-) (sbcB) [Escherichia coli strain MB20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCAAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CTGCCGTTCCGGTTAAGCTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAGAGAGAAAATGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585