Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SGGB_RS04175 Genome accession   NC_017576
Coordinates   815038..815904 (+) Length   288 a.a.
NCBI ID   WP_012961765.1    Uniprot ID   A0AA36JX39
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 810038..820904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS04145 (SGGB_0777) - 810314..811192 (+) 879 WP_012961762.1 F0F1 ATP synthase subunit gamma -
  SGGB_RS04150 (SGGB_0778) atpD 811259..812665 (+) 1407 WP_009853908.1 F0F1 ATP synthase subunit beta -
  SGGB_RS04155 (SGGB_0779) - 812678..813094 (+) 417 WP_009853909.1 F0F1 ATP synthase subunit epsilon -
  SGGB_RS04160 (SGGB_0780) - 813159..813395 (+) 237 WP_012961763.1 DUF1146 family protein -
  SGGB_RS04165 (SGGB_0781) murA 813458..814732 (+) 1275 WP_012961764.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGGB_RS04170 (SGGB_0782) - 814735..814923 (+) 189 WP_009853912.1 DNA-directed RNA polymerase subunit beta -
  SGGB_RS04175 (SGGB_0783) endA 815038..815904 (+) 867 WP_012961765.1 DNA/RNA non-specific endonuclease Machinery gene
  SGGB_RS04180 (SGGB_0784) pheS 816191..817234 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  SGGB_RS04185 (SGGB_0785) - 817270..817794 (+) 525 WP_009853915.1 GNAT family N-acetyltransferase -
  SGGB_RS04190 (SGGB_0786) pheT 817865..820270 (+) 2406 WP_012961766.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30836.90 Da        Isoelectric Point: 6.1087

>NTDB_id=48915 SGGB_RS04175 WP_012961765.1 815038..815904(+) (endA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MAKKSKLSKQTKSLLSLVILLVGIGTGWVTLTDSNDPLNQVVSLITGDSSSEITSNQSSSDSATPTQSLAETVLTDSVKE
QLGANIEWNGAGAYIINNNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTPWTPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANSESSTGQNYYESLVRKALDQNKRVRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFVPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=48915 SGGB_RS04175 WP_012961765.1 815038..815904(+) (endA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGGCAAAGAAATCAAAATTGTCTAAACAGACAAAATCCCTGCTGTCTTTGGTGATTTTGTTAGTTGGTATTGGTACTGG
TTGGGTGACGCTAACAGATTCGAACGACCCGCTCAATCAAGTCGTTTCGTTAATTACTGGTGACTCCTCTTCTGAAATAA
CGTCAAATCAATCGAGTTCTGACTCAGCAACGCCAACACAATCTTTGGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTGGGAGCAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATAATAATCAAACCTCCTTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACTGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAGACTGGAAATGGCTCAACGCCTTGGACGCCAGCTGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGATCGTGGTCATTTACTTGGTTATGCTTTGGTTGGTGGTCTAAA
AGGCTTTGATGCGTCAACAAGCAATCCTGACAATGTGGCAACACAGACTGCCTGGGCAAACGAGGCAAATTCGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAGAATAAACGAGTTCGTTACCGTGTTACCTTG
ATTTACGACGGTGATAATCTCTTAGCAAGCGGAACGCATTTGGAAGCCAAATCATCTGACGGTAGTCTAGAATTTAACGT
CTTTGTTCCAAATGTGCAAAGCGGACTGACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.129

86.111

0.569
  endA Streptococcus pneumoniae D39

66.129

86.111

0.569
  endA Streptococcus pneumoniae R6

66.129

86.111

0.569
  endA Streptococcus pneumoniae TIGR4

66.129

86.111

0.569

Multiple sequence alignment