Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF694_RS13240 Genome accession   NZ_CP062395
Coordinates   2709997..2710713 (-) Length   238 a.a.
NCBI ID   WP_064138584.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_005     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2704997..2715713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF694_RS13220 (IF694_13075) - 2706091..2707041 (+) 951 WP_000790321.1 LacI family DNA-binding transcriptional regulator -
  IF694_RS13225 (IF694_13080) - 2707190..2708674 (+) 1485 WP_000141423.1 sucrose-6-phosphate hydrolase -
  IF694_RS13230 (IF694_13085) - 2708671..2709630 (+) 960 WP_047213656.1 carbohydrate kinase -
  IF694_RS13235 (IF694_13090) - 2709818..2709925 (-) 108 WP_031927410.1 hypothetical protein -
  IF694_RS13240 (IF694_13095) agrA 2709997..2710713 (-) 717 WP_064138584.1 LytTR family DNA-binding domain-containing protein Regulator
  IF694_RS13245 (IF694_13100) - 2710732..2712024 (-) 1293 WP_001807128.1 GHKL domain-containing protein -
  IF694_RS13250 (IF694_13105) - 2712049..2712189 (-) 141 WP_001094303.1 cyclic lactone autoinducer peptide -
  IF694_RS13255 (IF694_13110) - 2712191..2712754 (-) 564 WP_001105716.1 accessory gene regulator AgrB -
  IF694_RS13260 (IF694_13115) hld 2713045..2713125 (+) 81 WP_000046023.1 delta-hemolysin -
  IF694_RS13265 (IF694_13120) - 2713723..2714508 (-) 786 WP_000867953.1 carbon-nitrogen family hydrolase -
  IF694_RS13270 (IF694_13125) - 2714860..2715486 (-) 627 WP_000522380.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27945.92 Da        Isoelectric Point: 6.2303

>NTDB_id=489133 IF694_RS13240 WP_064138584.1 2709997..2710713(-) (agrA) [Staphylococcus aureus strain NAS_AN_005]
MKIFICEDDPKQRENMVTIIKNYIMIEEKHMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=489133 IF694_RS13240 WP_064138584.1 2709997..2710713(-) (agrA) [Staphylococcus aureus strain NAS_AN_005]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCATATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCAAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCAGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996