Detailed information NTG0489124

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU73_RS19265
• Genome accession: NZ_CP073974
• Coordinates: 3978672..3979664 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3973672..3984664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU73_RS19235 (KFU73_19065)	ispD	3973733..3974443 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU73_RS19240 (KFU73_19070)	ispF	3974443..3974922 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU73_RS19245 (KFU73_19075)	truD	3974919..3975968 (+)	1050	WP_112919195.1	tRNA pseudouridine(13) synthase TruD	-
KFU73_RS19250 (KFU73_19080)	surE	3975949..3976710 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU73_RS19255 (KFU73_19085)	pcm	3976704..3977330 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU73_RS19260 (KFU73_19090)	nlpD	3977515..3978609 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU73_RS19265 (KFU73_19095)	rpoS	3978672..3979664 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU73_RS19270 (KFU73_19100)	ygbN	3979758..3981122 (-)	1365	WP_000104429.1	GntP family transporter	-
KFU73_RS19275 (KFU73_19105)	ygbM	3981211..3981987 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KFU73_RS19280 (KFU73_19110)	ygbL	3981992..3982630 (-)	639	WP_001278994.1	aldolase	-
KFU73_RS19285 (KFU73_19115)	otnK	3982627..3983889 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=489124 KFU73_RS19265 WP_000081550.1 3978672..3979664(+) (rpoS) [Escherichia coli strain MB22]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=489124 KFU73_RS19265 WP_000081550.1 3978672..3979664(+) (rpoS) [Escherichia coli strain MB22]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715