Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LP6_RS13525 Genome accession   NC_021350
Coordinates   2979258..2980049 (-) Length   263 a.a.
NCBI ID   WP_010948290.1    Uniprot ID   Q5ZSC9
Organism   Legionella pneumophila subsp. pneumophila str. Thunder Bay     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2974258..2985049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP6_RS13515 (LP6_2619) legS1 2975427..2976584 (-) 1158 WP_010948288.1 Dot/Icm T4SS effector LegS1 -
  LP6_RS13520 (LP6_2620) dacB 2977373..2979166 (-) 1794 WP_010948289.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LP6_RS13525 (LP6_2621) spo0J 2979258..2980049 (-) 792 WP_010948290.1 ParB/RepB/Spo0J family partition protein Regulator
  LP6_RS13530 (LP6_2622) ceg33 2980166..2980663 (-) 498 WP_010948291.1 Dot/Icm T4SS effector Ceg33 -
  LP6_RS13535 (LP6_2623) - 2980836..2981585 (-) 750 WP_010948292.1 CPBP family glutamic-type intramembrane protease -
  LP6_RS13540 (LP6_2624) rsmB 2981582..2982865 (-) 1284 WP_010948293.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LP6_RS13545 (LP6_2625) fmt 2982862..2983806 (-) 945 WP_010948294.1 methionyl-tRNA formyltransferase -
  LP6_RS13550 (LP6_2626) def 2983803..2984315 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30090.26 Da        Isoelectric Point: 5.7320

>NTDB_id=48909 LP6_RS13525 WP_010948290.1 2979258..2980049(-) (spo0J) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAQQIIGEEWSVRHLEQEIKSYKNKDINSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=48909 LP6_RS13525 WP_010948290.1 2979258..2980049(-) (spo0J) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATTGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGTTATCCTTTGGA
CATGCTCGTGTATTGGTTGGTTTAAATCCTGAACAACAAGAAATGTTTGCTCAGCAGATTATTGGAGAGGAATGGTCTGT
CAGACACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATATAAATAGCCCAAAAAACCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZSC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

38.077

98.859

0.376

Multiple sequence alignment