Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU73_RS00580 Genome accession   NZ_CP073974
Coordinates   115116..116543 (-) Length   475 a.a.
NCBI ID   WP_074150700.1    Uniprot ID   -
Organism   Escherichia coli strain MB22     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110116..121543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU73_RS00550 (KFU73_00545) yeeZ 110171..110995 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  KFU73_RS00555 (KFU73_00550) yeeY 111041..111970 (+) 930 WP_032177447.1 LysR substrate-binding domain-containing protein -
  KFU73_RS00560 (KFU73_00555) yoeI 112185..112247 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU73_RS00565 (KFU73_00560) plaP 112237..113595 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU73_RS00570 (KFU73_00565) tsuA 113774..114832 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU73_RS00575 (KFU73_00570) tsuB 114846..115073 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU73_RS00580 (KFU73_00575) sbcB 115116..116543 (-) 1428 WP_074150700.1 exodeoxyribonuclease I Machinery gene
  KFU73_RS00585 (KFU73_00580) dacD 116752..117918 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU73_RS00590 (KFU73_00585) sbmC 118037..118510 (+) 474 WP_032177419.1 DNA gyrase inhibitor SbmC -
  KFU73_RS00595 (KFU73_00590) yeeA 118708..119766 (+) 1059 WP_001200891.1 FUSC family protein -
  KFU73_RS00600 (KFU73_00595) tmaR 119938..120267 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU73_RS22885 (KFU73_00600) - 120368..120553 (-) 186 Protein_121 EutP/PduV family microcompartment system protein -
  KFU73_RS22890 (KFU73_00605) - 120613..120750 (+) 138 Protein_122 transposase domain-containing protein -
  KFU73_RS00615 (KFU73_00610) - 121039..121131 (-) 93 Protein_123 DUF957 domain-containing protein -
  KFU73_RS00620 (KFU73_00615) yeeW 121165..121359 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4700

>NTDB_id=489059 KFU73_RS00580 WP_074150700.1 115116..116543(-) (sbcB) [Escherichia coli strain MB22]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489059 KFU73_RS00580 WP_074150700.1 115116..116543(-) (sbcB) [Escherichia coli strain MB22]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583