Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF699_RS13575 Genome accession   NZ_CP062390
Coordinates   2739456..2740172 (-) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain NAS_AN_036     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2734456..2745172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF699_RS13555 (IF699_13495) - 2735548..2736498 (+) 951 WP_029625646.1 LacI family DNA-binding transcriptional regulator -
  IF699_RS13560 (IF699_13500) - 2736647..2738131 (+) 1485 WP_000141435.1 sucrose-6-phosphate hydrolase -
  IF699_RS13565 (IF699_13505) - 2738128..2739087 (+) 960 WP_001253302.1 carbohydrate kinase -
  IF699_RS13570 (IF699_13510) - 2739275..2739384 (-) 110 Protein_2636 hypothetical protein -
  IF699_RS13575 (IF699_13515) agrA 2739456..2740172 (-) 717 WP_000688498.1 LytTR family DNA-binding domain-containing protein Regulator
  IF699_RS13580 (IF699_13520) - 2740191..2741483 (-) 1293 WP_001657119.1 GHKL domain-containing protein -
  IF699_RS13585 (IF699_13525) - 2741508..2741648 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  IF699_RS13590 (IF699_13530) agrB 2741645..2742214 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  IF699_RS13595 hld 2742504..2742584 (+) 81 WP_000046022.1 delta-hemolysin -
  IF699_RS13600 (IF699_13540) - 2743184..2743969 (-) 786 WP_240024560.1 carbon-nitrogen family hydrolase -
  IF699_RS13605 (IF699_13545) - 2744330..2744956 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=489052 IF699_RS13575 WP_000688498.1 2739456..2740172(-) (agrA) [Staphylococcus aureus strain NAS_AN_036]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=489052 IF699_RS13575 WP_000688498.1 2739456..2740172(-) (agrA) [Staphylococcus aureus strain NAS_AN_036]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996