Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU82_RS08935 Genome accession   NZ_CP073968
Coordinates   1842121..1843548 (-) Length   475 a.a.
NCBI ID   WP_021563722.1    Uniprot ID   -
Organism   Escherichia coli strain MB30     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837121..1848548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU82_RS08905 (KFU82_08855) yeeZ 1837176..1838000 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KFU82_RS08910 (KFU82_08860) yeeY 1838046..1838975 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  KFU82_RS08915 (KFU82_08865) yoeI 1839190..1839252 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU82_RS08920 (KFU82_08870) plaP 1839242..1840600 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU82_RS08925 (KFU82_08875) tsuA 1840779..1841837 (+) 1059 WP_104773790.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU82_RS08930 (KFU82_08880) tsuB 1841851..1842078 (+) 228 WP_104773791.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU82_RS08935 (KFU82_08885) sbcB 1842121..1843548 (-) 1428 WP_021563722.1 exodeoxyribonuclease I Machinery gene
  KFU82_RS08940 (KFU82_08890) dacD 1843757..1844923 (+) 1167 WP_104773830.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU82_RS08945 (KFU82_08895) sbmC 1845042..1845515 (+) 474 WP_032224276.1 DNA gyrase inhibitor SbmC -
  KFU82_RS08950 (KFU82_08900) yeeA 1845714..1846772 (+) 1059 WP_001200886.1 FUSC family protein -
  KFU82_RS08955 (KFU82_08905) tmaR 1846944..1847273 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU82_RS08960 (KFU82_08910) - 1847374..1847670 (-) 297 Protein_1754 EutP/PduV family microcompartment system protein -
  KFU82_RS08965 (KFU82_08915) - 1847649..1848005 (+) 357 WP_104773828.1 cobalamin biosynthesis protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4740

>NTDB_id=489011 KFU82_RS08935 WP_021563722.1 1842121..1843548(-) (sbcB) [Escherichia coli strain MB30]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=489011 KFU82_RS08935 WP_021563722.1 1842121..1843548(-) (sbcB) [Escherichia coli strain MB30]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGCGCAGTATTAATTACCGGTATTACCCCACAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579