Detailed information NTG0488997

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU82_RS05085
• Genome accession: NZ_CP073968
• Coordinates: 1047100..1048092 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB30
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1042100..1053092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU82_RS05055 (KFU82_05015)	ispD	1042161..1042871 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU82_RS05060 (KFU82_05020)	ispF	1042871..1043350 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU82_RS05065 (KFU82_05025)	truD	1043347..1044396 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU82_RS05070 (KFU82_05030)	surE	1044377..1045138 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU82_RS05075 (KFU82_05035)	pcm	1045132..1045758 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU82_RS05080 (KFU82_05040)	nlpD	1045943..1047037 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU82_RS05085 (KFU82_05045)	rpoS	1047100..1048092 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU82_RS05090 (KFU82_05050)	ygbN	1048186..1049550 (-)	1365	WP_049254918.1	GntP family transporter	-
KFU82_RS05095 (KFU82_05055)	ygbM	1049639..1050415 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KFU82_RS05100 (KFU82_05060)	ygbL	1050420..1051058 (-)	639	WP_001278994.1	aldolase	-
KFU82_RS05105 (KFU82_05065)	otnK	1051055..1052317 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=488997 KFU82_RS05085 WP_000081550.1 1047100..1048092(+) (rpoS) [Escherichia coli strain MB30]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=488997 KFU82_RS05085 WP_000081550.1 1047100..1048092(+) (rpoS) [Escherichia coli strain MB30]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715