Detailed information NTG0488914

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU79_RS05375
• Genome accession: NZ_CP073962
• Coordinates: 1120088..1121080 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1115088..1126080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU79_RS05345 (KFU79_05290)	ispD	1115149..1115859 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU79_RS05350 (KFU79_05295)	ispF	1115859..1116338 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU79_RS05355 (KFU79_05300)	truD	1116335..1117384 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU79_RS05360 (KFU79_05305)	surE	1117365..1118126 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU79_RS05365 (KFU79_05310)	pcm	1118120..1118746 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU79_RS05370 (KFU79_05315)	nlpD	1118931..1120025 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KFU79_RS05375 (KFU79_05320)	rpoS	1120088..1121080 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU79_RS05380 (KFU79_05325)	ygbN	1121174..1122538 (-)	1365	WP_000104441.1	GntP family transporter	-
KFU79_RS05385 (KFU79_05330)	ygbM	1122627..1123403 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KFU79_RS05390 (KFU79_05335)	ygbL	1123408..1124046 (-)	639	WP_001278994.1	aldolase	-
KFU79_RS05395 (KFU79_05340)	otnK	1124043..1125305 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=488914 KFU79_RS05375 WP_000081550.1 1120088..1121080(+) (rpoS) [Escherichia coli strain MB31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=488914 KFU79_RS05375 WP_000081550.1 1120088..1121080(+) (rpoS) [Escherichia coli strain MB31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715