Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF703_RS14125 Genome accession   NZ_CP062382
Coordinates   2828131..2828847 (-) Length   238 a.a.
NCBI ID   WP_240024665.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_068     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823131..2833847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF703_RS14105 (IF703_13955) - 2824225..2825175 (+) 951 WP_070956084.1 LacI family DNA-binding transcriptional regulator -
  IF703_RS14110 (IF703_13960) - 2825324..2826808 (+) 1485 WP_000141423.1 sucrose-6-phosphate hydrolase -
  IF703_RS14115 (IF703_13965) - 2826805..2827764 (+) 960 WP_047213656.1 carbohydrate kinase -
  IF703_RS14120 (IF703_13970) - 2827952..2828059 (-) 108 WP_031927410.1 hypothetical protein -
  IF703_RS14125 (IF703_13975) agrA 2828131..2828847 (-) 717 WP_240024665.1 LytTR family DNA-binding domain-containing protein Regulator
  IF703_RS14130 (IF703_13980) - 2828866..2830158 (-) 1293 WP_001807128.1 GHKL domain-containing protein -
  IF703_RS14135 (IF703_13985) - 2830183..2830323 (-) 141 WP_001094303.1 cyclic lactone autoinducer peptide -
  IF703_RS14140 (IF703_13990) - 2830325..2830888 (-) 564 WP_001105716.1 accessory gene regulator AgrB -
  IF703_RS14145 (IF703_13995) hld 2831179..2831259 (+) 81 WP_000046023.1 delta-hemolysin -
  IF703_RS14150 (IF703_14000) - 2831857..2832642 (-) 786 WP_000867953.1 carbon-nitrogen family hydrolase -
  IF703_RS14155 (IF703_14005) - 2832994..2833620 (-) 627 WP_000522380.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27906.84 Da        Isoelectric Point: 5.6151

>NTDB_id=488885 IF703_RS14125 WP_240024665.1 2828131..2828847(-) (agrA) [Staphylococcus aureus strain NAS_AN_068]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVEKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=488885 IF703_RS14125 WP_240024665.1 2828131..2828847(-) (agrA) [Staphylococcus aureus strain NAS_AN_068]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCAAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCAGTGAGAAACGTTGAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996