Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU90_RS08555 Genome accession   NZ_CP073953
Coordinates   1796664..1798091 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain MB49     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1791664..1803091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU90_RS08525 (KFU90_08490) yeeZ 1791718..1792542 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KFU90_RS08530 (KFU90_08495) yeeY 1792588..1793517 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  KFU90_RS08535 (KFU90_08500) yoeI 1793732..1793794 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU90_RS08540 (KFU90_08505) plaP 1793784..1795142 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU90_RS08545 (KFU90_08510) tsuA 1795322..1796380 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU90_RS08550 (KFU90_08515) tsuB 1796394..1796621 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU90_RS08555 (KFU90_08520) sbcB 1796664..1798091 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  KFU90_RS08560 (KFU90_08525) dacD 1798300..1799466 (+) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU90_RS08565 (KFU90_08530) sbmC 1799585..1800057 (+) 473 Protein_1682 DNA gyrase inhibitor SbmC -
  KFU90_RS08570 (KFU90_08535) yeeA 1800255..1801313 (+) 1059 WP_001200890.1 FUSC family protein -
  KFU90_RS08575 (KFU90_08540) tmaR 1801485..1801814 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU90_RS08580 (KFU90_08545) - 1801915..1802097 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KFU90_RS08585 (KFU90_08550) - 1802160..1802297 (+) 138 Protein_1686 transposase domain-containing protein -
  KFU90_RS08590 (KFU90_08555) - 1802586..1802678 (-) 93 Protein_1687 DUF957 domain-containing protein -
  KFU90_RS08595 (KFU90_08560) yeeW 1802712..1802906 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=488759 KFU90_RS08555 WP_000980605.1 1796664..1798091(-) (sbcB) [Escherichia coli strain MB49]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488759 KFU90_RS08555 WP_000980605.1 1796664..1798091(-) (sbcB) [Escherichia coli strain MB49]
ATGATGAATGACGGTAAGCAACAATCTACGTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579