Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | LP6_RS06525 | Genome accession | NC_021350 |
| Coordinates | 1416657..1417682 (+) | Length | 341 a.a. |
| NCBI ID | WP_015444568.1 | Uniprot ID | Q9S4T1 |
| Organism | Legionella pneumophila subsp. pneumophila str. Thunder Bay | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1411657..1422682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LP6_RS06495 (LP6_1261) | - | 1412091..1412408 (+) | 318 | WP_010947009.1 | DUF2845 domain-containing protein | - |
| LP6_RS06500 (LP6_1262) | - | 1412445..1412816 (+) | 372 | WP_010947010.1 | protease inhibitor I42 family protein | - |
| LP6_RS06505 (LP6_1263) | - | 1412864..1414588 (-) | 1725 | WP_010947011.1 | NAD-dependent malic enzyme | - |
| LP6_RS06510 | - | 1414668..1415051 (+) | 384 | WP_010947012.1 | hypothetical protein | - |
| LP6_RS06515 (LP6_1264) | surE | 1415054..1415809 (+) | 756 | WP_010947013.1 | 5'/3'-nucleotidase SurE | - |
| LP6_RS06520 (LP6_1265) | - | 1415828..1416571 (+) | 744 | WP_010947014.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LP6_RS06525 (LP6_1266) | rpoS | 1416657..1417682 (+) | 1026 | WP_015444568.1 | RNA polymerase sigma factor RpoS | Regulator |
| LP6_RS06530 (LP6_1267) | hmgA | 1417785..1419035 (-) | 1251 | WP_010947016.1 | homogentisate 1,2-dioxygenase | - |
| LP6_RS06535 (LP6_1268) | - | 1419181..1419924 (+) | 744 | WP_010947017.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LP6_RS06540 (LP6_1269) | ruvC | 1419924..1420448 (+) | 525 | WP_010947018.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LP6_RS06545 (LP6_1270) | ruvA | 1420445..1421044 (+) | 600 | WP_010947019.1 | Holliday junction branch migration protein RuvA | - |
| LP6_RS06550 (LP6_1271) | - | 1421094..1421414 (+) | 321 | WP_010947020.1 | hypothetical protein | - |
| LP6_RS06555 | - | 1421494..1422482 (-) | 989 | Protein_1287 | IS481 family transposase | - |
Sequence
Protein
Download Length: 341 a.a. Molecular weight: 39449.70 Da Isoelectric Point: 4.3732
>NTDB_id=48874 LP6_RS06525 WP_015444568.1 1416657..1417682(+) (rpoS) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF
Nucleotide
Download Length: 1026 bp
>NTDB_id=48874 LP6_RS06525 WP_015444568.1 1416657..1417682(+) (rpoS) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.509 |
81.232 |
0.548 |