Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU75_RS08535 Genome accession   NZ_CP073949
Coordinates   1777953..1779380 (-) Length   475 a.a.
NCBI ID   WP_257187372.1    Uniprot ID   -
Organism   Escherichia coli strain MB50     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1772953..1784380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU75_RS08505 (KFU75_08455) yeeZ 1773008..1773832 (+) 825 WP_000754747.1 SDR family oxidoreductase -
  KFU75_RS08510 (KFU75_08460) yeeY 1773878..1774807 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU75_RS08515 (KFU75_08465) yoeI 1775022..1775084 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU75_RS08520 (KFU75_08470) plaP 1775074..1776432 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU75_RS08525 (KFU75_08475) tsuA 1776611..1777669 (+) 1059 WP_000492311.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU75_RS08530 (KFU75_08480) tsuB 1777683..1777910 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU75_RS08535 (KFU75_08485) sbcB 1777953..1779380 (-) 1428 WP_257187372.1 exodeoxyribonuclease I Machinery gene
  KFU75_RS08540 (KFU75_08490) dacD 1779589..1780755 (+) 1167 WP_257187374.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU75_RS08545 (KFU75_08495) sbmC 1780874..1781347 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KFU75_RS08550 (KFU75_08500) yeeA 1781545..1782603 (+) 1059 WP_001200891.1 FUSC family protein -
  KFU75_RS08555 (KFU75_08505) tmaR 1782775..1783104 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU75_RS08560 (KFU75_08510) - 1783205..1783387 (-) 183 WP_306588390.1 EutP/PduV family microcompartment system protein -
  KFU75_RS08565 (KFU75_08515) - 1783459..1783587 (+) 129 Protein_1681 transposase domain-containing protein -
  KFU75_RS08570 (KFU75_08520) - 1783876..1783968 (-) 93 Protein_1682 DUF957 domain-containing protein -
  KFU75_RS08575 (KFU75_08525) yeeW 1784002..1784196 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54469.80 Da        Isoelectric Point: 5.6070

>NTDB_id=488681 KFU75_RS08535 WP_257187372.1 1777953..1779380(-) (sbcB) [Escherichia coli strain MB50]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPENA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488681 KFU75_RS08535 WP_257187372.1 1777953..1779380(-) (sbcB) [Escherichia coli strain MB50]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAAATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

98.947

0.587