Detailed information NTG0488668

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU75_RS04845
• Genome accession: NZ_CP073949
• Coordinates: 995565..996557 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB50
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 990565..1001557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU75_RS04815 (KFU75_04775)	ispD	990626..991336 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU75_RS04820 (KFU75_04780)	ispF	991336..991815 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU75_RS04825 (KFU75_04785)	truD	991812..992861 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU75_RS04830 (KFU75_04790)	surE	992842..993603 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU75_RS04835 (KFU75_04795)	pcm	993597..994223 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU75_RS04840 (KFU75_04800)	nlpD	994408..995502 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KFU75_RS04845 (KFU75_04805)	rpoS	995565..996557 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU75_RS04850 (KFU75_04810)	ygbN	996651..998015 (-)	1365	WP_000104441.1	GntP family transporter	-
KFU75_RS04855 (KFU75_04815)	ygbM	998104..998880 (-)	777	WP_112909052.1	HPr family phosphocarrier protein	-
KFU75_RS04860 (KFU75_04820)	ygbL	998885..999523 (-)	639	WP_001278994.1	aldolase	-
KFU75_RS04865 (KFU75_04825)	otnK	999520..1000782 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=488668 KFU75_RS04845 WP_000081550.1 995565..996557(+) (rpoS) [Escherichia coli strain MB50]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=488668 KFU75_RS04845 WP_000081550.1 995565..996557(+) (rpoS) [Escherichia coli strain MB50]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715