Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU68_RS08860 Genome accession   NZ_CP073946
Coordinates   1863498..1864925 (-) Length   475 a.a.
NCBI ID   WP_001618667.1    Uniprot ID   -
Organism   Escherichia coli strain MB51     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858498..1869925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU68_RS08830 (KFU68_08765) yeeZ 1858554..1859378 (+) 825 WP_257202011.1 SDR family oxidoreductase -
  KFU68_RS08835 (KFU68_08770) yeeY 1859424..1860353 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU68_RS08840 (KFU68_08775) yoeI 1860568..1860630 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU68_RS08845 (KFU68_08780) plaP 1860620..1861978 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU68_RS08850 (KFU68_08785) tsuA 1862156..1863214 (+) 1059 WP_257202012.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU68_RS08855 (KFU68_08790) tsuB 1863228..1863455 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU68_RS08860 (KFU68_08795) sbcB 1863498..1864925 (-) 1428 WP_001618667.1 exodeoxyribonuclease I Machinery gene
  KFU68_RS08865 (KFU68_08800) dacD 1865134..1866300 (+) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU68_RS08870 (KFU68_08805) sbmC 1866419..1866892 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  KFU68_RS08875 (KFU68_08810) yeeA 1867090..1868148 (+) 1059 WP_001200890.1 FUSC family protein -
  KFU68_RS08880 (KFU68_08815) tmaR 1868320..1868649 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU68_RS08885 (KFU68_08820) - 1868750..1868932 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KFU68_RS08890 (KFU68_08825) - 1868995..1869132 (+) 138 Protein_1745 transposase domain-containing protein -
  KFU68_RS08895 (KFU68_08830) - 1869421..1869513 (-) 93 Protein_1746 DUF957 domain-containing protein -
  KFU68_RS08900 (KFU68_08835) yeeW 1869547..1869741 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=488599 KFU68_RS08860 WP_001618667.1 1863498..1864925(-) (sbcB) [Escherichia coli strain MB51]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488599 KFU68_RS08860 WP_001618667.1 1863498..1864925(-) (sbcB) [Escherichia coli strain MB51]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585