Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KFU68_RS07025 Genome accession   NZ_CP073946
Coordinates   1462405..1462881 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain MB51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1457405..1467881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU68_RS07000 (KFU68_06950) dsdA 1457608..1458936 (-) 1329 WP_257201983.1 D-serine ammonia-lyase -
  KFU68_RS07005 (KFU68_06955) dsdX 1458954..1460291 (-) 1338 WP_000556048.1 D-serine transporter DsdX -
  KFU68_RS07010 (KFU68_06960) dsdC 1460509..1461444 (+) 936 WP_001300996.1 DNA-binding transcriptional regulator DsdC -
  KFU68_RS07015 (KFU68_06965) - 1461640..1462047 (-) 408 WP_001389100.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KFU68_RS07020 (KFU68_06970) - 1462121..1462342 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  KFU68_RS07025 (KFU68_06975) radC 1462405..1462881 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  KFU68_RS07030 (KFU68_06980) - 1462897..1463382 (-) 486 WP_000214413.1 antirestriction protein -
  KFU68_RS07035 (KFU68_06985) - 1463474..1464292 (-) 819 WP_257201984.1 DUF932 domain-containing protein -
  KFU68_RS07040 (KFU68_06990) - 1464620..1466287 (-) 1668 Protein_1377 autotransporter domain-containing protein -
  KFU68_RS07045 (KFU68_06995) - 1466296..1466784 (-) 489 Protein_1378 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=488595 KFU68_RS07025 WP_001186773.1 1462405..1462881(-) (radC) [Escherichia coli strain MB51]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=488595 KFU68_RS07025 WP_001186773.1 1462405..1462881(-) (radC) [Escherichia coli strain MB51]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392