Detailed information NTG0488586

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU68_RS05230
• Genome accession: NZ_CP073946
• Coordinates: 1088779..1089771 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB51
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1083779..1094771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU68_RS05200 (KFU68_05155)	ispD	1083840..1084550 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU68_RS05205 (KFU68_05160)	ispF	1084550..1085029 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU68_RS05210 (KFU68_05165)	truD	1085026..1086075 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU68_RS05215 (KFU68_05170)	surE	1086056..1086817 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU68_RS05220 (KFU68_05175)	pcm	1086811..1087437 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU68_RS05225 (KFU68_05180)	nlpD	1087622..1088716 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU68_RS05230 (KFU68_05185)	rpoS	1088779..1089771 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU68_RS05235 (KFU68_05190)	ygbN	1089865..1091229 (-)	1365	WP_000104441.1	GntP family transporter	-
KFU68_RS05240 (KFU68_05195)	ygbM	1091317..1092093 (-)	777	WP_202792961.1	HPr family phosphocarrier protein	-
KFU68_RS05245 (KFU68_05200)	ygbL	1092098..1092736 (-)	639	WP_001278994.1	aldolase	-
KFU68_RS05250 (KFU68_05205)	otnK	1092733..1093995 (-)	1263	WP_257201959.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=488586 KFU68_RS05230 WP_000081550.1 1088779..1089771(+) (rpoS) [Escherichia coli strain MB51]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=488586 KFU68_RS05230 WP_000081550.1 1088779..1089771(+) (rpoS) [Escherichia coli strain MB51]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715