Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KFU68_RS00340 Genome accession   NZ_CP073946
Coordinates   71587..72255 (+) Length   222 a.a.
NCBI ID   WP_024180116.1    Uniprot ID   -
Organism   Escherichia coli strain MB51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66587..77255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU68_RS00310 (KFU68_00300) yicC 66606..67469 (-) 864 WP_087899243.1 YicC/YloC family endoribonuclease -
  KFU68_RS00315 (KFU68_00305) rph 67596..68312 (+) 717 WP_001247093.1 ribonuclease PH -
  KFU68_RS00320 (KFU68_00310) pyrE 68378..69019 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  KFU68_RS00325 (KFU68_00315) slmA 69056..69652 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  KFU68_RS00330 (KFU68_00320) dut 69759..70217 (-) 459 WP_000976070.1 dUTP diphosphatase -
  KFU68_RS00335 (KFU68_00325) coaBC 70195..71415 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  KFU68_RS00340 (KFU68_00330) radC 71587..72255 (+) 669 WP_024180116.1 DNA repair protein RadC Machinery gene
  KFU68_RS00345 (KFU68_00335) rpmB 72472..72708 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  KFU68_RS00350 (KFU68_00340) rpmG 72729..72896 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  KFU68_RS00355 (KFU68_00345) mutM 72994..73803 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  KFU68_RS00360 (KFU68_00350) coaD 73842..74321 (-) 480 WP_128424110.1 pantetheine-phosphate adenylyltransferase -
  KFU68_RS00365 (KFU68_00355) waaA 74329..75606 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  KFU68_RS00370 (KFU68_00360) rfaQ 76019..77077 (+) 1059 WP_000360398.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25243.38 Da        Isoelectric Point: 7.9748

>NTDB_id=488566 KFU68_RS00340 WP_024180116.1 71587..72255(+) (radC) [Escherichia coli strain MB51]
MKNNALLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=488566 KFU68_RS00340 WP_024180116.1 71587..72255(+) (radC) [Escherichia coli strain MB51]
GTGAAAAACAATGCACTGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(10-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496