Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU83_RS08525 Genome accession   NZ_CP073939
Coordinates   1778315..1779742 (-) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli strain MB53     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773315..1784742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU83_RS08495 (KFU83_08435) yeeZ 1773370..1774194 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KFU83_RS08500 (KFU83_08440) yeeY 1774240..1775169 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  KFU83_RS08505 (KFU83_08445) yoeI 1775384..1775446 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU83_RS08510 (KFU83_08450) plaP 1775436..1776794 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU83_RS08515 (KFU83_08455) tsuA 1776973..1778031 (+) 1059 WP_000492311.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU83_RS08520 (KFU83_08460) tsuB 1778045..1778272 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU83_RS08525 (KFU83_08465) sbcB 1778315..1779742 (-) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  KFU83_RS08530 (KFU83_08470) dacD 1779951..1781117 (+) 1167 Protein_1677 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU83_RS08535 (KFU83_08475) sbmC 1781236..1781709 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  KFU83_RS08540 (KFU83_08480) yeeA 1781907..1782965 (+) 1059 WP_257188342.1 FUSC family protein -
  KFU83_RS08545 (KFU83_08485) tmaR 1783137..1783466 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU83_RS08550 (KFU83_08490) - 1783567..1784010 (-) 444 WP_096148389.1 EutP/PduV family microcompartment system protein -
  KFU83_RS08555 (KFU83_08495) pduU 1784015..1784365 (-) 351 WP_000211395.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=488439 KFU83_RS08525 WP_000980620.1 1778315..1779742(-) (sbcB) [Escherichia coli strain MB53]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488439 KFU83_RS08525 WP_000980620.1 1778315..1779742(-) (sbcB) [Escherichia coli strain MB53]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577