Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   K751_RS06285 Genome accession   NC_021218
Coordinates   1329074..1330123 (+) Length   349 a.a.
NCBI ID   WP_015642430.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324074..1335123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS06270 (K751_01665) - 1324969..1326219 (-) 1251 WP_031250106.1 DUF874 family protein -
  K751_RS06275 (K751_01660) asd 1326657..1327697 (-) 1041 WP_015642432.1 aspartate-semialdehyde dehydrogenase -
  K751_RS06280 (K751_01655) hisS 1327684..1329012 (-) 1329 WP_015642431.1 histidine--tRNA ligase -
  K751_RS06285 (K751_01650) waaF 1329074..1330123 (+) 1050 WP_015642430.1 lipopolysaccharide heptosyltransferase II Regulator
  K751_RS06290 (K751_01645) - 1330327..1330815 (-) 489 WP_000744157.1 hypothetical protein -
  K751_RS06295 (K751_01640) fusA 1331352..1333430 (-) 2079 WP_000101843.1 elongation factor G -
  K751_RS06300 (K751_01635) rpsG 1333442..1333909 (-) 468 WP_015642429.1 30S ribosomal protein S7 -
  K751_RS06305 (K751_01630) rpsL 1333925..1334332 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39602.43 Da        Isoelectric Point: 9.6679

>NTDB_id=48843 K751_RS06285 WP_015642430.1 1329074..1330123(+) (waaF) [Helicobacter pylori UM066]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYALKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDAIVSEEILKLIKSLLKNPLLFN
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=48843 K751_RS06285 WP_015642430.1 1329074..1330123(+) (waaF) [Helicobacter pylori UM066]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACGCCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTTCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATCAAAAGTTTATTAAAAAACCCCTTACTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.842

97.994

0.361

Multiple sequence alignment