Detailed information NTG0488347

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU61_RS04915
• Genome accession: NZ_CP073936
• Coordinates: 1025252..1026244 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB56
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1020252..1031244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU61_RS04885 (KFU61_04845)	ispD	1020313..1021023 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU61_RS04890 (KFU61_04850)	ispF	1021023..1021502 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU61_RS04895 (KFU61_04855)	truD	1021499..1022548 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU61_RS04900 (KFU61_04860)	surE	1022529..1023290 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU61_RS04905 (KFU61_04865)	pcm	1023284..1023910 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU61_RS04910 (KFU61_04870)	nlpD	1024095..1025189 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KFU61_RS04915 (KFU61_04875)	rpoS	1025252..1026244 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU61_RS04920 (KFU61_04880)	ygbN	1026338..1027609 (-)	1272	WP_257181993.1	GntP family transporter	-
KFU61_RS04925 (KFU61_04885)	ygbM	1027791..1028567 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KFU61_RS04930 (KFU61_04890)	ygbL	1028572..1029210 (-)	639	WP_001278994.1	aldolase	-
KFU61_RS04935 (KFU61_04895)	otnK	1029207..1030469 (-)	1263	Protein_972	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=488347 KFU61_RS04915 WP_000081550.1 1025252..1026244(+) (rpoS) [Escherichia coli strain MB56]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=488347 KFU61_RS04915 WP_000081550.1 1025252..1026244(+) (rpoS) [Escherichia coli strain MB56]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715