Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K751_RS03440 Genome accession   NC_021218
Coordinates   701467..702987 (+) Length   506 a.a.
NCBI ID   WP_015642897.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 696467..707987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS03410 (K751_09355) moaC 696617..697092 (+) 476 Protein_669 cyclic pyranopterin monophosphate synthase MoaC -
  K751_RS03415 (K751_04655) hpaA 697211..697993 (+) 783 WP_015642902.1 flagellar sheath lipoprotein HpaA -
  K751_RS03420 (K751_04650) - 698018..698854 (+) 837 WP_015642901.1 outer membrane protein -
  K751_RS03425 (K751_04645) tig 698967..700322 (+) 1356 WP_015642900.1 trigger factor -
  K751_RS03430 (K751_04640) clpP 700345..700932 (+) 588 WP_015642899.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  K751_RS03435 (K751_04635) def 700937..701464 (+) 528 WP_015642898.1 peptide deformylase -
  K751_RS03440 (K751_04630) comM 701467..702987 (+) 1521 WP_015642897.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K751_RS03445 (K751_04625) - 703012..705072 (+) 2061 WP_015642896.1 heavy metal translocating P-type ATPase -
  K751_RS03450 (K751_04620) - 705108..706394 (+) 1287 WP_015642895.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57192.22 Da        Isoelectric Point: 8.5434

>NTDB_id=48834 K751_RS03440 WP_015642897.1 701467..702987(+) (comM) [Helicobacter pylori UM066]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSGQDGAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSITKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQWVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAETQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=48834 K751_RS03440 WP_015642897.1 701467..702987(+) (comM) [Helicobacter pylori UM066]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTAGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGACTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACCTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCCCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGGGCAAGACGG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTCTTTTTTGATGAATTGCCTCATTTCAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGGTTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTATAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATGGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAA
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCAGATTTAAACGCTTGCGAGAACATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.64

100

0.966
  comM Acinetobacter baylyi ADP1

35.812

100

0.362

Multiple sequence alignment