Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF733_RS13210 Genome accession   NZ_CP062352
Coordinates   2687039..2687755 (-) Length   238 a.a.
NCBI ID   WP_240022432.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_233     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2682039..2692755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF733_RS13190 (IF733_13120) - 2683131..2684081 (+) 951 WP_000790331.1 LacI family DNA-binding transcriptional regulator -
  IF733_RS13195 (IF733_13125) - 2684230..2685714 (+) 1485 WP_000141432.1 glycoside hydrolase family 32 protein -
  IF733_RS13200 (IF733_13130) - 2685711..2686670 (+) 960 WP_049311823.1 carbohydrate kinase -
  IF733_RS13205 (IF733_13135) - 2686858..2686967 (-) 110 Protein_2567 hypothetical protein -
  IF733_RS13210 (IF733_13140) agrA 2687039..2687755 (-) 717 WP_240022432.1 LytTR family DNA-binding domain-containing protein Regulator
  IF733_RS13215 (IF733_13145) - 2687774..2689057 (-) 1284 WP_000447888.1 sensor histidine kinase -
  IF733_RS13220 (IF733_13150) - 2689087..2689230 (-) 144 WP_001094921.1 cyclic lactone autoinducer peptide -
  IF733_RS13225 (IF733_13155) - 2689233..2689796 (-) 564 WP_001105696.1 accessory gene regulator ArgB-like protein -
  IF733_RS13690 (IF733_13160) - 2690032..2690166 (+) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  IF733_RS13235 (IF733_13165) - 2690766..2691551 (-) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  IF733_RS13240 (IF733_13170) - 2691912..2692538 (-) 627 WP_000522381.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27917.95 Da        Isoelectric Point: 6.0927

>NTDB_id=488300 IF733_RS13210 WP_240022432.1 2687039..2687755(-) (agrA) [Staphylococcus aureus strain NAS_AN_233]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLIFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=488300 IF733_RS13210 WP_240022432.1 2687039..2687755(-) (agrA) [Staphylococcus aureus strain NAS_AN_233]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAATATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996