Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU62_RS08390 Genome accession   NZ_CP073932
Coordinates   1777397..1778824 (-) Length   475 a.a.
NCBI ID   WP_000980615.1    Uniprot ID   -
Organism   Escherichia coli strain MB57     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1772397..1783824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU62_RS08360 (KFU62_08300) yeeZ 1772452..1773276 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KFU62_RS08365 (KFU62_08305) yeeY 1773322..1774251 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  KFU62_RS08370 (KFU62_08310) yoeI 1774466..1774528 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU62_RS08375 (KFU62_08315) plaP 1774518..1775876 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU62_RS08380 (KFU62_08320) tsuA 1776055..1777113 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU62_RS08385 (KFU62_08325) tsuB 1777127..1777354 (+) 228 WP_000985272.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU62_RS08390 (KFU62_08330) sbcB 1777397..1778824 (-) 1428 WP_000980615.1 exodeoxyribonuclease I Machinery gene
  KFU62_RS08395 (KFU62_08335) dacD 1779033..1780199 (+) 1167 WP_001352246.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU62_RS08400 (KFU62_08340) sbmC 1780318..1780791 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  KFU62_RS08405 (KFU62_08345) yeeA 1780990..1782048 (+) 1059 WP_001200892.1 FUSC family protein -
  KFU62_RS08410 (KFU62_08350) tmaR 1782220..1782549 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU62_RS08415 - 1782650..1783015 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  KFU62_RS08420 (KFU62_08360) - 1783286..1783675 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.71 Da        Isoelectric Point: 5.4700

>NTDB_id=488279 KFU62_RS08390 WP_000980615.1 1777397..1778824(-) (sbcB) [Escherichia coli strain MB57]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488279 KFU62_RS08390 WP_000980615.1 1777397..1778824(-) (sbcB) [Escherichia coli strain MB57]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583