Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU91_RS08700 Genome accession   NZ_CP073929
Coordinates   1843241..1844668 (-) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain MB64     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838241..1849668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU91_RS08670 (KFU91_08600) yeeZ 1838296..1839120 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  KFU91_RS08675 (KFU91_08605) yeeY 1839166..1840095 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU91_RS08680 (KFU91_08610) yoeI 1840310..1840372 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU91_RS08685 (KFU91_08615) plaP 1840362..1841720 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU91_RS08690 (KFU91_08620) tsuA 1841899..1842957 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU91_RS08695 (KFU91_08625) tsuB 1842971..1843198 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU91_RS08700 (KFU91_08630) sbcB 1843241..1844668 (-) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  KFU91_RS08705 (KFU91_08635) dacD 1844877..1846043 (+) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU91_RS08710 (KFU91_08640) sbmC 1846162..1846635 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  KFU91_RS08715 (KFU91_08645) yeeA 1846833..1847891 (+) 1059 WP_001200905.1 FUSC family protein -
  KFU91_RS08720 (KFU91_08650) tmaR 1848063..1848392 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU91_RS08725 (KFU91_08655) - 1848493..1848675 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KFU91_RS08730 (KFU91_08660) - 1848738..1848875 (+) 138 Protein_1713 transposase domain-containing protein -
  KFU91_RS08735 (KFU91_08665) - 1849164..1849256 (-) 93 Protein_1714 DUF957 domain-containing protein -
  KFU91_RS08740 (KFU91_08670) yeeW 1849290..1849484 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=488197 KFU91_RS08700 WP_000980592.1 1843241..1844668(-) (sbcB) [Escherichia coli strain MB64]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488197 KFU91_RS08700 WP_000980592.1 1843241..1844668(-) (sbcB) [Escherichia coli strain MB64]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583