Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IF738_RS06290 Genome accession   NZ_CP062348
Coordinates   1284458..1284904 (-) Length   148 a.a.
NCBI ID   WP_078065350.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_260     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279458..1289904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF738_RS06260 (IF738_06245) gcvPA 1280384..1281730 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF738_RS06265 (IF738_06250) gcvT 1281750..1282841 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IF738_RS06270 (IF738_06255) - 1283000..1283524 (-) 525 WP_001015121.1 shikimate kinase -
  IF738_RS06275 (IF738_06260) - 1283514..1283660 (-) 147 WP_001789879.1 hypothetical protein -
  IF738_RS06280 (IF738_06265) comGF 1283757..1284254 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF738_RS06285 (IF738_06270) comGE 1284172..1284471 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF738_RS06290 (IF738_06275) comGD 1284458..1284904 (-) 447 WP_078065350.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF738_RS06295 (IF738_06280) comGC 1284882..1285193 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF738_RS06300 (IF738_06285) comGB 1285207..1286277 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF738_RS06305 (IF738_06290) comGA 1286249..1287223 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF738_RS06310 (IF738_06295) - 1287275..1287898 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  IF738_RS06315 (IF738_06300) - 1287895..1288224 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF738_RS06320 (IF738_06305) - 1288224..1289210 (-) 987 WP_000161314.1 ROK family glucokinase -
  IF738_RS06325 (IF738_06310) - 1289207..1289410 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17193.38 Da        Isoelectric Point: 10.3312

>NTDB_id=488192 IF738_RS06290 WP_078065350.1 1284458..1284904(-) (comGD) [Staphylococcus aureus strain NAS_AN_260]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIVFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=488192 IF738_RS06290 WP_078065350.1 1284458..1284904(-) (comGD) [Staphylococcus aureus strain NAS_AN_260]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGTCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993