Detailed information NTG0488184

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU91_RS05145
• Genome accession: NZ_CP073929
• Coordinates: 1071780..1072772 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB64
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1066780..1077772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU91_RS05115 (KFU91_05065)	ispD	1066841..1067551 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU91_RS05120 (KFU91_05070)	ispF	1067551..1068030 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU91_RS05125 (KFU91_05075)	truD	1068027..1069076 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU91_RS05130 (KFU91_05080)	surE	1069057..1069818 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU91_RS05135 (KFU91_05085)	pcm	1069812..1070438 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU91_RS05140 (KFU91_05090)	nlpD	1070623..1071717 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU91_RS05145 (KFU91_05095)	rpoS	1071780..1072772 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU91_RS05150 (KFU91_05100)	ygbN	1072866..1074230 (-)	1365	WP_191007525.1	GntP family transporter	-
KFU91_RS05155 (KFU91_05105)	ygbM	1074319..1075095 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KFU91_RS05160 (KFU91_05110)	ygbL	1075100..1075738 (-)	639	WP_001278994.1	aldolase	-
KFU91_RS05165 (KFU91_05115)	otnK	1075735..1076997 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=488184 KFU91_RS05145 WP_000081550.1 1071780..1072772(+) (rpoS) [Escherichia coli strain MB64]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=488184 KFU91_RS05145 WP_000081550.1 1071780..1072772(+) (rpoS) [Escherichia coli strain MB64]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715