Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF740_RS13685 Genome accession   NZ_CP062344
Coordinates   2756082..2756801 (-) Length   239 a.a.
NCBI ID   WP_240023381.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_265     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2751082..2761801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF740_RS13665 (IF740_13615) - 2752174..2753124 (+) 951 WP_000790323.1 LacI family DNA-binding transcriptional regulator -
  IF740_RS13670 (IF740_13620) - 2753273..2754757 (+) 1485 WP_000141413.1 glycoside hydrolase family 32 protein -
  IF740_RS13675 (IF740_13625) - 2754754..2755713 (+) 960 WP_001253302.1 carbohydrate kinase -
  IF740_RS13680 (IF740_13630) - 2755901..2756010 (-) 110 Protein_2657 hypothetical protein -
  IF740_RS13685 (IF740_13635) agrA 2756082..2756801 (-) 720 WP_240023381.1 LytTR family DNA-binding domain-containing protein Regulator
  IF740_RS13690 (IF740_13640) - 2756816..2758108 (-) 1293 WP_001657119.1 GHKL domain-containing protein -
  IF740_RS13695 (IF740_13645) - 2758133..2758273 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  IF740_RS13700 (IF740_13650) agrB 2758270..2758839 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  IF740_RS14115 (IF740_13655) - 2759075..2759209 (+) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  IF740_RS13710 (IF740_13660) - 2759809..2760594 (-) 786 WP_000867952.1 carbon-nitrogen family hydrolase -
  IF740_RS13715 (IF740_13665) - 2760955..2761581 (-) 627 WP_000522377.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 28098.98 Da        Isoelectric Point: 5.6151

>NTDB_id=488135 IF740_RS13685 WP_240023381.1 2756082..2756801(-) (agrA) [Staphylococcus aureus strain NAS_AN_265]
MYENFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHD
PVGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDI
MFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 720 bp        

>NTDB_id=488135 IF740_RS13685 WP_240023381.1 2756082..2756801(-) (agrA) [Staphylococcus aureus strain NAS_AN_265]
ATGTATGAAAATTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGAT
AGAAGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACA
TAGGCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGAC
CCAGTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGA
TTTTATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAAT
TATTATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATT
ATGTTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTT
AAAAGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTA
TAGATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(152-238)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.574

98.326

0.979