Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU77_RS09090 Genome accession   NZ_CP073926
Coordinates   1900456..1901883 (-) Length   475 a.a.
NCBI ID   WP_072855032.1    Uniprot ID   -
Organism   Escherichia coli strain MB98     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895456..1906883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU77_RS09060 (KFU77_09015) yeeZ 1895511..1896335 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KFU77_RS09065 (KFU77_09020) yeeY 1896381..1897310 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU77_RS09070 (KFU77_09025) yoeI 1897525..1897587 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU77_RS09075 (KFU77_09030) plaP 1897577..1898935 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU77_RS09080 (KFU77_09035) tsuA 1899114..1900172 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU77_RS09085 (KFU77_09040) tsuB 1900186..1900413 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU77_RS09090 (KFU77_09045) sbcB 1900456..1901883 (-) 1428 WP_072855032.1 exodeoxyribonuclease I Machinery gene
  KFU77_RS09095 (KFU77_09050) dacD 1902092..1903258 (+) 1167 WP_000830142.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU77_RS09100 (KFU77_09055) - 1903424..1904644 (+) 1221 WP_000343760.1 ISL3-like element ISKox3 family transposase -
  KFU77_RS09105 (KFU77_09060) sbmC 1904700..1905173 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  KFU77_RS09110 (KFU77_09065) yeeA 1905371..1906429 (+) 1059 WP_001200892.1 FUSC family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54494.81 Da        Isoelectric Point: 5.3498

>NTDB_id=488114 KFU77_RS09090 WP_072855032.1 1900456..1901883(-) (sbcB) [Escherichia coli strain MB98]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLLDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488114 KFU77_RS09090 WP_072855032.1 1900456..1901883(-) (sbcB) [Escherichia coli strain MB98]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGCTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577