Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KFU71_RS09080 Genome accession   NZ_CP073924
Coordinates   1894810..1896237 (-) Length   475 a.a.
NCBI ID   WP_072132999.1    Uniprot ID   -
Organism   Escherichia coli strain MB165     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889810..1901237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU71_RS09050 (KFU71_09015) yeeZ 1889865..1890689 (+) 825 WP_032202495.1 SDR family oxidoreductase -
  KFU71_RS09055 (KFU71_09020) yeeY 1890735..1891664 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KFU71_RS09060 (KFU71_09025) yoeI 1891879..1891941 (+) 63 WP_010723108.1 membrane protein YoeI -
  KFU71_RS09065 (KFU71_09030) plaP 1891931..1893289 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KFU71_RS09070 (KFU71_09035) tsuA 1893468..1894526 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  KFU71_RS09075 (KFU71_09040) tsuB 1894540..1894767 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KFU71_RS09080 (KFU71_09045) sbcB 1894810..1896237 (-) 1428 WP_072132999.1 exodeoxyribonuclease I Machinery gene
  KFU71_RS09085 (KFU71_09050) dacD 1896446..1897612 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KFU71_RS09090 (KFU71_09055) sbmC 1897731..1898204 (+) 474 WP_001105390.1 DNA gyrase inhibitor SbmC -
  KFU71_RS09095 (KFU71_09060) yeeA 1898402..1899460 (+) 1059 WP_021513121.1 FUSC family protein -
  KFU71_RS09100 (KFU71_09065) tmaR 1899632..1899961 (+) 330 WP_000450409.1 DUF496 family protein -
  KFU71_RS09105 (KFU71_09070) - 1900062..1900244 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KFU71_RS09110 (KFU71_09075) - 1900307..1900444 (+) 138 Protein_1791 transposase domain-containing protein -
  KFU71_RS09115 (KFU71_09080) - 1900733..1900825 (-) 93 Protein_1792 DUF957 domain-containing protein -
  KFU71_RS09120 (KFU71_09085) yeeW 1900859..1901053 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4720

>NTDB_id=488032 KFU71_RS09080 WP_072132999.1 1894810..1896237(-) (sbcB) [Escherichia coli strain MB165]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=488032 KFU71_RS09080 WP_072132999.1 1894810..1896237(-) (sbcB) [Escherichia coli strain MB165]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581