Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF748_RS08675 Genome accession   NZ_CP062336
Coordinates   1754452..1754847 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1749452..1759847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF748_RS08650 (IF748_08610) thiE 1749858..1750499 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  IF748_RS08655 (IF748_08615) thiM 1750501..1751292 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  IF748_RS08660 (IF748_08620) thiD 1751276..1752106 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF748_RS08665 (IF748_08625) tenA 1752099..1752788 (-) 690 WP_000396079.1 thiaminase II -
  IF748_RS08670 (IF748_08630) sceD 1753368..1754063 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  IF748_RS08675 (IF748_08635) ssb 1754452..1754847 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF748_RS08680 (IF748_08640) - 1755041..1755481 (+) 441 WP_000846746.1 YwpF-like family protein -
  IF748_RS08685 (IF748_08645) fabZ 1755540..1755980 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF748_RS08690 (IF748_08650) murA 1756014..1757279 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF748_RS08695 (IF748_08655) - 1757390..1757623 (-) 234 WP_000384523.1 DUF1146 family protein -
  IF748_RS08700 (IF748_08660) - 1757755..1757847 (-) 93 WP_031835036.1 hypothetical protein -
  IF748_RS08705 (IF748_08665) - 1758184..1758588 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=487965 IF748_RS08675 WP_000932694.1 1754452..1754847(-) (ssb) [Staphylococcus aureus strain NAS_NP_161]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=487965 IF748_RS08675 WP_000932694.1 1754452..1754847(-) (ssb) [Staphylococcus aureus strain NAS_NP_161]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992