Detailed information NTG0487938

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KEH54_RS05080
• Genome accession: NZ_CP073768
• Coordinates: 1058777..1059769 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SH19PTE6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1053777..1064769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEH54_RS05050 (KEH54_05050)	ispD	1053838..1054548 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KEH54_RS05055 (KEH54_05055)	ispF	1054548..1055027 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KEH54_RS05060 (KEH54_05060)	truD	1055024..1056073 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KEH54_RS05065 (KEH54_05065)	surE	1056054..1056815 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KEH54_RS05070 (KEH54_05070)	pcm	1056809..1057435 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KEH54_RS05075 (KEH54_05075)	nlpD	1057620..1058714 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KEH54_RS05080 (KEH54_05080)	rpoS	1058777..1059769 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KEH54_RS05085 (KEH54_05085)	ygbN	1059863..1061227 (-)	1365	WP_000104441.1	GntP family transporter	-
KEH54_RS05090 (KEH54_05090)	ygbM	1061316..1062092 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KEH54_RS05095 (KEH54_05095)	ygbL	1062097..1062735 (-)	639	WP_001278994.1	aldolase	-
KEH54_RS05100 (KEH54_05100)	otnK	1062732..1063994 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=487938 KEH54_RS05080 WP_000081550.1 1058777..1059769(+) (rpoS) [Escherichia coli strain SH19PTE6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=487938 KEH54_RS05080 WP_000081550.1 1058777..1059769(+) (rpoS) [Escherichia coli strain SH19PTE6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715