Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   K750_RS05340 Genome accession   NC_021217
Coordinates   1122399..1123448 (+) Length   349 a.a.
NCBI ID   WP_015643840.1    Uniprot ID   -
Organism   Helicobacter pylori UM037     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1117399..1128448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K750_RS05325 (K750_02500) - 1118310..1119548 (-) 1239 WP_015643843.1 DUF874 family protein -
  K750_RS05330 (K750_02495) asd 1119982..1121022 (-) 1041 WP_015643842.1 aspartate-semialdehyde dehydrogenase -
  K750_RS05335 (K750_02490) hisS 1121009..1122337 (-) 1329 WP_015643841.1 histidine--tRNA ligase -
  K750_RS05340 (K750_02485) waaF 1122399..1123448 (+) 1050 WP_015643840.1 lipopolysaccharide heptosyltransferase II Regulator
  K750_RS05345 (K750_02480) - 1123640..1123921 (-) 282 WP_015643839.1 hypothetical protein -
  K750_RS05350 (K750_02475) - 1124139..1125128 (+) 990 WP_015643838.1 aldo/keto reductase -
  K750_RS09140 - 1125296..1125505 (+) 210 WP_080218735.1 hypothetical protein -
  K750_RS05355 (K750_02470) fusA 1125940..1128018 (-) 2079 WP_015643837.1 elongation factor G -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39484.35 Da        Isoelectric Point: 9.9737

>NTDB_id=48789 K750_RS05340 WP_015643840.1 1122399..1123448(+) (waaF) [Helicobacter pylori UM037]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGSQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAKAAAALLEKGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=48789 K750_RS05340 WP_015643840.1 1122399..1123448(+) (waaF) [Helicobacter pylori UM037]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTAATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGTTCACAAATCACTTGCGAACTCTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGACTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCCAAAGCCGCTGCTGCTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCATCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATCTGTGCATGAAATCCATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.596

97.994

0.378

Multiple sequence alignment