Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   J6O57_RS05460 Genome accession   NZ_CP073718
Coordinates   1117118..1118110 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain CX08     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112118..1123110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O57_RS05430 (J6O57_05375) ispD 1112179..1112889 (+) 711 WP_000246136.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  J6O57_RS05435 (J6O57_05380) ispF 1112889..1113368 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  J6O57_RS05440 (J6O57_05385) truD 1113365..1114414 (+) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  J6O57_RS05445 (J6O57_05390) surE 1114395..1115156 (+) 762 WP_223566660.1 5'/3'-nucleotidase SurE -
  J6O57_RS05450 (J6O57_05395) pcm 1115150..1115776 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  J6O57_RS05455 (J6O57_05400) nlpD 1115961..1117055 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  J6O57_RS05460 (J6O57_05405) rpoS 1117118..1118110 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  J6O57_RS05465 (J6O57_05410) - 1118231..1118638 (-) 408 WP_001208085.1 MarR family winged helix-turn-helix transcriptional regulator -
  J6O57_RS05470 (J6O57_05415) - 1118785..1119378 (+) 594 WP_001237175.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  J6O57_RS05475 (J6O57_05420) - 1119378..1120805 (+) 1428 WP_000863218.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  J6O57_RS05480 (J6O57_05425) - 1120816..1121052 (+) 237 WP_000562980.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  J6O57_RS05485 (J6O57_05430) pphB 1121094..1121750 (-) 657 WP_057107931.1 protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=487769 J6O57_RS05460 WP_000081550.1 1117118..1118110(+) (rpoS) [Escherichia coli strain CX08]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=487769 J6O57_RS05460 WP_000081550.1 1117118..1118110(+) (rpoS) [Escherichia coli strain CX08]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATTGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715