Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LT41_RS03385 Genome accession   NZ_CP073712
Coordinates   629985..630368 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 624985..635368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT41_RS03365 (LT41_003365) - 625064..626998 (-) 1935 WP_010891871.1 ribonuclease R family protein -
  LT41_RS03370 (LT41_003370) ilvC 627117..628139 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  LT41_RS03375 (LT41_003375) - 628143..629225 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  LT41_RS03380 (LT41_003380) dprA 629215..629988 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  LT41_RS03385 (LT41_003385) dprB 629985..630368 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  LT41_RS03390 (LT41_003390) - 630397..631236 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LT41_RS03395 (LT41_003395) msrA 631412..631909 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LT41_RS03400 (LT41_003400) ppa 631950..632468 (-) 519 WP_032584152.1 inorganic diphosphatase -
  LT41_RS03405 (LT41_003405) adk 632478..633056 (-) 579 WP_002859580.1 adenylate kinase -
  LT41_RS03410 (LT41_003410) aspS 633053..634804 (-) 1752 WP_032584150.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=487713 LT41_RS03385 WP_002858579.1 629985..630368(+) (dprB) [Campylobacter jejuni strain G1]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=487713 LT41_RS03385 WP_002858579.1 629985..630368(+) (dprB) [Campylobacter jejuni strain G1]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449